We’re on GitHub!
Find our BNHM tools on Github
TIP: BNHM Students and Staff, you are eligible for a educational upgrade at GitHub including 5 free private repositories. Sign up here.
Looking for Bioinformatics pipeline?
Bioinformatics pipeline scripts from Berkeley researchers:
MVZseq– Pipeline for Illumina SCPP experiment data, exon capture, and transcriptome sequence data
Computational Genomics Resource Laboratory (CGRL)- QB3 Ke Bi’s scripts for QB3
Dan Portik – various python scripts for alignment, exon coverage, tasks
Tyler Linderoth – various scripts for NGS work
Species mapping and distribution modeling, analysis
Web Services for Biodiversity Data
ESRI ArcGIS for BNHM users
Access installation information here if you have a password. Contact BNHM@berkeley.edu for more information.
Other UC Berkeley Resources
A version control service available to campus software development teams which facilitates the creation and administration of centrally supported Subversion repositories.
Everyone needs a bibliography manager. Consider free, opensource Zotero if you are not already using it. If you are the Library has ways Berkeley users can sync their library attachments to their Berkeley Box account via Webdav.